SIFTER


SIFTER: Statistical Inference of Function Through Evolutionary Relationships


SIFTER Downloadable Code

The newest version of the code (version 1.2), fully described in a recently submitted paper (please email for draft: bee@compbio.berkeley.edu). This is still research-quality code, so expect a little work to go into setting it it. It is still in active development, so if you have any comments, problems, or feedback, please send me an email (bee@compbio.berkeley.edu).

To set up SIFTER on your computer, please see the README in the top directory, and to build the files see the readme in the scripts folder. There is a hypothetical family there as a test family so you can see what all of the files look like and how output is organized.

Download the newest version of the code here: [SIFTER_1.2]

We also include here the previous version of SIFTER, described in the ICML paper posted above, for additional files and as reference: [SIFTER_0.3]


Gold-Standard Data Sets

We plan on releasing our gold-standard data sets for all of the data presented in the most recent paper. In order to do this, an additional paper needs to be submitted; please email me in the meanwhile to have access to any of this information.

SIFTER Future Developments

Check back here for a SIFTER server sometime in the next few months!
Barbara Engelhardt